Data Geekdom
Thursday, January 9, 2020
GABAC: The Genomic Adaptive Binary Arithmetic Coder
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Recently a paper was published in Bioinformatics titled " GABAC: an arithmetic coding solution for genomic data ", by Voges et al....
1 comment:
Friday, May 3, 2019
Data compression sweet spot
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Historical context In testing CRAM 3.0, 3.1 (and 4.0) compression codecs I was reminded of a chart I made on the results of the Sequenc...
Monday, February 25, 2019
LinkedIn's MiGz format, vs bgzf / bgzip
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LinkedIn have created a new gzip variant that permits both multi-threaded encoding and decoding. It achieves this by using the EXTRA fiel...
Wednesday, October 17, 2018
MPEG-G challenge, 1 week on.
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Preface: all my blogs are my own personal views and may not necessarily be the views of my employer, the Wellcome Sanger Institute. ...
1 comment:
Wednesday, October 10, 2018
MPEG-G: An open challenge
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Preface: all my blogs are my own personal views and may not necessarily be the views of my employer, the Wellcome Sanger Institute. Seve...
6 comments:
Tuesday, October 9, 2018
Reflections on the GA4GH conference
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On 3rd to 5th October we have had a large GA4GH conference, attended by around 400 people from across the world and sectors (academia, pha...
CRAM 4 proposal
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Just a quick one this time. The slides for the talk I gave at the GA4GH 6th Plenary meeting in Basel, on 3rd October 2018 are now online a...
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